Hawkeye: an interactive visual analytics tool for genome assemblies

TitleHawkeye: an interactive visual analytics tool for genome assemblies
Publication TypeJournal Articles
Year of Publication2007
AuthorsSchatz MC, Phillippy AM, Shneiderman B, Salzberg SL
JournalGenome BiologyGenome Biology
Volume8
Type of Article10.1186/gb-2007-8-3-r34
ISBN Number1465-6906
Abstract

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.