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Ishimori N., Walsh K., Zheng X., Lu F., Hannenhalli S, Nusskern D., Mural R., Paigen B.. 2004. CHARACTERIZATION OF< i> Ath17, A QUANTITATIVE TRAIT LOCUS FOR ATHEROSCLEROSIS SUSCEPTIBILITY BETWEEN C57BL/6J AND 129S1/SvImJ; SINGLE-NUCLEOTIDE POLYMORPHISMS HAVE IMPORTANT IMPLICATIONS ON IDENTIFYING ATHEROSCLEROSIS MODIFIER GENES. Cardiovascular PathologyCardiovascular Pathology. 13

Peng XB, Mount SM. 1990. Characterization of enhancer-of-white-apricot in Drosophila melanogaster.. Genetics. 126(4):1061-9.

Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M., Jin Z, Lambris JD, Geisbrecht BV. 2007. Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological ChemistryJournal of Biological Chemistry. 282

Talledo M, Rivera ING, Lipp EK, Neale A, Karaolis D, Huq A, Colwell RR. 2003. Characterization of a Vibrio cholerae phage isolated from the coastal water of Peru. Environmental MicrobiologyEnvironmental Microbiology. 5

El‐Sayed NM, Alarcon CM, Beck JC, Sheffield VC, Donelson JE. 1995. cDNA expressed sequence tags of Trypanosoma brucei rhodesiense provide new insights into the biology of the parasite. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 73

Mount SM. 1982. A catalogue of splice junction sequences.. Nucleic Acids Res. 10(2):459-72.

Pollock DD, Eisen JA, Doggett NA, Cummings MP. 2000. A Case for Evolutionary Genomics and the Comprehensive Examination of Sequence Biodiversity. Molecular Biology and EvolutionMol Biol EvolMolecular Biology and EvolutionMol Biol Evol. 17

Kim G., Selengut J., Levine R.L. 2000. Carbonic anhydrase III: the phosphatase activity is extrinsic. Archives of biochemistry and biophysicsArchives of biochemistry and biophysics. 377

Almeida M, Pop M, Le Chatelier E, Prifti E, Pons N, Ghozlane A, S Ehrlich D. 2016. Capturing the most wanted taxa through cross-sample correlations. The ISME Journal.

Bazinet AL, Cummings MP, Mitter KT, Mitter CW. 2013. Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study PLoS One. 8

Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S et al.. 2011. Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60

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Cummings MP, Temple G.G. 2010. Broader incorporation of bioinformatics in education: opportunities and challenges. Brief BioinformBrief Bioinform. 11

Shneiderman B, Colwell RR, Diamond S, Greenhalgh P, Wulf W. 2007. Bridging art and science with creativity support tools. Proceedings of the 6th ACM SIGCHI conference on Creativity & cognition.

Cummings MP. 2004. A book like its cover –- The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny, Edited by M. Salemi and A.-M. Vandamme. Heredity. 93:234-235.

Cummings MP. 2004. A book like its cover. HeredityHeredity. 93

Ye C, Hsiao C, Bravo HCorrada. 2014. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.. Bioinformatics. 30(9):1214-9.

Lee S., Wang T.D, Hashmi N., Cummings MP. 2007. Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp SystFuture Generation Comp Syst. 23

Jakupciak JP, Colwell RR. 2009. Biological agent detection technologies. Molecular Ecology ResourcesMolecular Ecology Resources. 9

Hannenhalli S. 2008. BIOINFORMATICS REVIEW. BIOINFORMATICSBioinformatics. 24

Gevers D, Pop M., Schloss PD, Huttenhower C. 2012. Bioinformatics for the Human Microbiome Project. PLOS Computational BiologyPLOS Computational Biology. 8

Pop M., Salzberg SL. 2008. Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24

Simola D.F, Bucan M., Dalva M., Hannenhalli S, Liebhaber S., Ungar L.. 2005. Bioinformatic Prediction of mRNA Targets of the Fragile X Mental Retardation Protein.

Huq A, Whitehouse CA, Grim CJ, Alam M, Colwell RR. 2008. Biofilms in water, its role and impact in human disease transmission. Current Opinion in BiotechnologyCurrent Opinion in Biotechnology. 19

Grand J, Cummings MP, Rebelo TG, Ricketts TH, Neel MC. 2007. Biased data reduce efficiency and effectiveness of conservation reserve networks. Ecology LettersEcology Letters. 10

Ghurye J, Pop M. 2016. Better Identification of Repeats in Metagenomic Scaffolding. 9838:174-184.

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