Publications
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2010. The power of protein interaction networks for associating genes with diseases. BioinformaticsBioinformatics. 26
2016. Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. Nature Communications. 7:13570.
1996. Positional sequencing by hybridization. Computer applications in the biosciences : CABIOSComputer applications in the biosciences : CABIOS. 12
2007. Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation. Nucleic Acids ResearchNucleic Acids Research. 35
2011. Population Dynamics of Vibrio Cholerae and Cholera in the Bangladesh Sundarbans: Role of Zooplankton Diversity. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol..
1996. Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied MathematicsDiscrete Applied Mathematics. 71
1995. Polynomial-time algorithm for computing translocation distance between genomes. Combinatorial Pattern MatchingCombinatorial Pattern Matching.
2004. Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 6
1991. Polyadenylylation in copia requires unusually distant upstream sequences.. Proc Natl Acad Sci U S A. 88(8):3038-42.
2015. Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. Infection, Genetics and Evolution. 30:318-322.
1998. Pigment composition of putatively achlorophyllous angiosperms. Plant Syst EvolPlant Syst Evol. 210
1998. Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. Mol Phylogenet EvolMol Phylogenet Evol. 10
2000. Phylogenetic relationships of ıt Phytophthora species based on ribosomal ITS I DNA sequence analysis with emphasis on Waterhouse groups V and VI. Mycol ResMycol Res. 104
2000. Phylogenetic relationships of Acanthocephala based on analysis of 18S ribosomal RNA gene sequences. J Mol EvolJ Mol Evol. 50
2009. A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolutionMolecular biology and evolution. 26
2003. Phylogenetic analysis reveals five independent transfers of the chloroplast gene ıt rbcL to the mitochondrial genome in angiosperms. Curr GenetCurr Genet. 43
2002. Phylogenetic analysis based on 18S ribosomal RNA gene sequences supports the existence of class Polyacanthocephala (Acanthocephala). Mol Phylogenet EvolMol Phylogenet Evol. 23
2014. Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer.. Elife. 3
2016. A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity. npj Biofilms and Microbiomes. 2:16004.
2003. Persistence of adhesive properties in Vibrio cholerae after long‐term exposure to sea water. Environmental MicrobiologyEnvironmental Microbiology. 5
1999. Penumbral tissue damage following acute stroke: a computational investigation. Progress in brain researchProgress in brain research. 121
1995. Patterns of functional damage in neural network models of associative memory. Neural computationNeural computation. 7