Publications
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2009. Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput BiologyPLoS Comput BiolPLoS Comput BiologyPLoS Comput Biol. 5
2014. Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination.. Mol Cell Proteomics. 13(4):1106-18.
1998. Spreading depression in focal ischemia: A computational study. Journal of Cerebral Blood Flow & MetabolismJournal of Cerebral Blood Flow & Metabolism. 18
1992. Splicing signals in Drosophila: intron size, information content, and consensus sequences.. Nucleic Acids Res. 20(16):4255-62.
1983. Splicing of messenger RNA precursors is inhibited by antisera to small nuclear ribonucleoprotein.. Cell. 35(1):101-7.
2007. SplicePort--an interactive splice-site analysis tool.. Nucleic Acids Res. 35(Web Server issue):W285-91.
2007. SplicePort--An interactive splice-site analysis tool. Nucleic Acids ResearchNucleic Acids Research. 35
2012. Speeding Up Particle Trajectory Simulations under Moving Force Fields using GPUs. Journal of Computing and Information Science in EngineeringJournal of Computing and Information Science in Engineering.
1993. Species-specific signals for the splicing of a short Drosophila intron in vitro.. Mol Cell Biol. 13(2):1104-18.
2013. Somatic alterations contributing to metastasis of a castration-resistant prostate cancer. Human mutationHuman mutation. 34
2011. Social Snapshot: A System for Temporally Coupled Social Photography. Computer Graphics and Applications, IEEEComputer Graphics and Applications, IEEE. 31
1983. Small ribonucleoproteins from eukaryotes: structures and roles in RNA biogenesis.. Cold Spring Harb Symp Quant Biol. 47 Pt 2:893-900.
1994. Slipped-strand mispairing in a plastid gene: ıt rpoC2 in grasses (Poaceae). Mol Biol EvolMol Biol Evol. 11
2010. Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.. BMC Bioinformatics. 11:52.
2010. Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function. BMC bioinformaticsBMC Bioinformatics. 11
2015. Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions.. BMC Genomics. 16(1):1108.
2004. Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA. BMC BioinformaticsBMC Bioinformatics. 5
2002. Simple Procedure for Rapid Identification of Vibrio Cholerae from the Aquatic Environment. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68
2008. A simple binomial test for estimating sequencing errors in public repository 16S rRNA sequences. Journal of Microbiological MethodsJournal of Microbiological Methods. 72
1994. A SIMD solution to the sequence comparison problem on the MGAP. International Conference on Application Specific Array Processors, 1994. Proceedings.
2015. Shape analysis of high-throughput transcriptomics experiment data.. Biostatistics. 16(4):627-40.
2003. Sex-lethal splicing autoregulation in vivo: interactions between SEX-LETHAL, the U1 snRNP and U2AF underlie male exon skipping.. Development. 130(3):463-71.